ok so i might of figured it out. all of a sudden i realized the beeps happened at the same time the hdd light blinked.
A little while ago I found out this had to with the autorun feature of windows. which i have disabled which stopped the light from always blinking. But I think maybe cause of this updated bios. The light starts blinking again on every boot. and if u open the case and listen inside the pc you can hear a beep at the exact same intervals and time the lights blinking. I have to put a disc in the cd tray, wait for it to try and load, and then take it out.....and the light will stop blinking.
but i still hear the beep inside the pc case. does the new bios have some sort of dsentry in it? weird. I wonder if this is whats causing my issues in games now as well. I kind of wish i never upgraded it, i prolly only had to upgrade the firmware on the hdd.
is it possible to downgrade the bios back to the original one?